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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
214
DNA binding
193
Transcription
29
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
46
August, 2017
40
May, 2022
30
December, 2017
22
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
3
November, 2018
2
June, 2019
1
December, 2018
1
February, 2020
Available data
354
bam
288
bigWig
174
tsv
135
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
444
Homo sapiens
Biosample type
317
tissue
101
cell line
13
in vitro differentiated cells
13
primary cell
Organ
874
pancreas
637
connective tissue
468
adipose tissue
462
epithelium
444
liver
366
heart
338
kidney
281
brain
224
vasculature
220
blood vessel
159
bone element
136
artery
121
limb
90
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
444
AMP
Genome assembly (visualization)
294
hg19
244
GRCh38
Lab
386
AMP-T2D consortium
40
Karen Mohlke, UNC
18
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
STARR-seq
target.investigated_as!
transcription factor
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
444 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
20
2
1
1
1
1
right lobe of liver
8
3
1
2
2
cell line
HepG2
81
14
1
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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