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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
pCHi-C
1
single cell RNA-seq
Assay category
155
DNA binding
25
DNA accessibility
5
DNA methylation
4
Transcription
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
54
August, 2017
50
May, 2020
48
December, 2017
20
May, 2022
7
November, 2018
5
October, 2019
4
July, 2019
1
February, 2021
1
March, 2020
Available data
139
bam
116
bigWig
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
190
Homo sapiens
Biosample type
385
cell line
190
tissue
15
in vitro differentiated cells
9
primary cell
Organ
295
heart
249
kidney
246
brain
215
pancreas
190
liver
125
blood vessel
125
vasculature
115
limb
96
bone element
91
connective tissue
90
adipose tissue
76
musculature of body
71
artery
38
nerve
33
eye
24
spleen
19
lung
18
ureter
13
epithelium
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
190
AMP
Genome assembly (visualization)
119
hg19
89
GRCh38
Lab
170
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_title!
pCHi-C
total RNA-seq
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
145
20
2
3
1
1
1
1
right lobe of liver
10
1
2
1
2
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