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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
169
total RNA-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
ATAC-seq
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
173
Transcription
9
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
143
May, 2020
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
2
February, 2021
2
June, 2019
2
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
Available data
172
tsv
171
bam
170
bigWig
13
fastq
8
bed narrowPeak
6
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
196
Homo sapiens
Biosample type
165
tissue
21
cell line
10
primary cell
Organ
727
pancreas
526
connective tissue
416
adipose tissue
395
epithelium
300
kidney
256
heart
196
liver
158
bone element
133
vasculature
130
blood vessel
107
artery
66
brain
56
limb
56
musculature of body
52
eye
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
196
AMP
Genome assembly (visualization)
175
hg19
171
GRCh38
Lab
183
AMP-T2D consortium
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
pCHi-C
ChIP-seq
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
196 results
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total RNA-seq
DNase-seq
WGBS
Hi-C
ATAC-seq
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
147
2
3
1
1
1
1
right lobe of liver
3
2
1
1
2
cell line
HepG2
14
1
2
1
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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