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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
139
ChIP-seq
5
WGBS
4
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
173
Transcription
139
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
166
May, 2020
66
November, 2017
36
August, 2017
18
August, 2021
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
October, 2019
Available data
681
bam
602
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
172
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
327
Homo sapiens
Biosample type
227
tissue
91
cell line
8
primary cell
1
in vitro differentiated cells
Organ
731
pancreas
604
connective tissue
476
adipose tissue
373
epithelium
327
liver
199
heart
169
kidney
150
bone element
102
vasculature
100
blood vessel
81
brain
67
artery
35
musculature of body
30
limb
24
eye
23
embryo
19
lung
16
nerve
15
blood
15
bodily fluid
10
spleen
9
vein
8
skeleton
4
gonad
4
ovary
2
pericardium
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
327
AMP
Genome assembly (visualization)
187
hg19
164
GRCh38
Lab
310
AMP-T2D consortium
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
pCHi-C
lab.title!
Karen Mohlke, UNC
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
327 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
147
63
3
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
71
1
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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