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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
190
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
RRBS
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
194
Transcription
29
DNA accessibility
8
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
34
August, 2021
11
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
1
February, 2020
1
March, 2020
Available data
682
bam
622
bigWig
464
fastq
441
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
11
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
786
Homo sapiens
Biosample type
397
cell line
360
tissue
15
in vitro differentiated cells
14
primary cell
Organ
936
pancreas
784
liver
678
connective tissue
516
epithelium
489
adipose tissue
387
heart
351
kidney
281
brain
230
vasculature
224
blood vessel
158
bone element
141
artery
118
limb
89
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
786
AMP
Genome assembly (visualization)
623
hg19
532
GRCh38
Lab
716
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
pCHi-C
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
786 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
1
tissue
liver
145
167
20
2
3
1
1
1
right lobe of liver
10
3
1
2
1
2
pericardium
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
pericardium fibroblast
1
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