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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
180
total RNA-seq
24
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
184
Transcription
30
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
10
July, 2019
8
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
677
bam
605
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
163
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
9
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
754
Homo sapiens
Biosample type
368
cell line
361
tissue
15
in vitro differentiated cells
10
primary cell
Organ
941
pancreas
753
liver
674
connective tissue
518
epithelium
488
adipose tissue
284
brain
258
heart
229
vasculature
223
blood vessel
222
kidney
158
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
29
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
754
AMP
Genome assembly (visualization)
606
hg19
528
GRCh38
Lab
714
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
pCHi-C
month_released!
August, 2021
BIOSAMPLE
ASSAY
754 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
islet of Langerhans
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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