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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
3
pCHi-C
small RNA-seq
Assay category
169
Transcription
Date released
144
May, 2020
9
August, 2021
5
December, 2019
5
January, 2019
4
July, 2019
3
March, 2020
1
February, 2020
1
October, 2019
Available data
702
bam
635
bigWig
489
fastq
455
bed narrowPeak
371
bigBed narrowPeak
172
tsv
86
tagAlign
64
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
172
Homo sapiens
Biosample type
152
tissue
15
cell line
5
primary cell
Organ
475
connective tissue
415
pancreas
398
adipose tissue
171
liver
167
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
23
kidney
22
brain
14
embryo
7
limb
7
musculature of body
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
172
AMP
Genome assembly (visualization)
159
GRCh38
159
hg19
Lab
163
AMP-T2D consortium
9
Bing Ren, UCSD
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
172 results
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total RNA-seq
pCHi-C
tissue
liver
147
1
right lobe of liver
3
spleen
1
cell line
HepG2
14
1
primary cell
hepatocyte
5
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