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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
489
ChIP-seq
188
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
489
DNA binding
189
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
305
transcription factor
95
control
86
histone modification
85
histone
82
recombinant protein
54
RNA binding protein
53
narrow histone mark
32
broad histone mark
20
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
614
bam
568
bigWig
402
fastq
391
bed narrowPeak
308
bigBed narrowPeak
169
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
1
vcf
Organism
722
Homo sapiens
Biosample type
401
cell line
307
tissue
14
primary cell
Organ
930
pancreas
722
liver
679
connective tissue
499
epithelium
487
adipose tissue
385
heart
351
kidney
280
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
24
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
722
AMP
Genome assembly (visualization)
570
hg19
477
GRCh38
Lab
651
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
small RNA-seq
month_released!
December, 2017
March, 2020
BIOSAMPLE
ASSAY
722 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
tissue
liver
107
166
20
2
3
1
1
right lobe of liver
3
1
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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