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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
215
DNA binding
181
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
86
transcription factor
82
histone modification
81
histone
49
narrow histone mark
47
control
32
broad histone mark
23
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
360
bam
334
bigWig
175
bed narrowPeak
162
tsv
150
fastq
109
bigBed narrowPeak
70
tagAlign
10
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
438
Homo sapiens
Biosample type
358
tissue
55
cell line
15
in vitro differentiated cells
10
primary cell
Organ
940
pancreas
676
connective tissue
512
epithelium
487
adipose tissue
438
liver
300
heart
224
vasculature
223
kidney
221
blood vessel
191
brain
159
bone element
139
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
438
AMP
Genome assembly (visualization)
338
hg19
308
GRCh38
Lab
398
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
assay_title!
small RNA-seq
month_released!
November, 2017
August, 2021
BIOSAMPLE
ASSAY
438 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
single cell RNA-seq
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
cell line
HepG2
45
5
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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