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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
608
ChIP-seq
184
total RNA-seq
23
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
608
DNA binding
185
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
113
control
101
histone modification
100
histone
82
recombinant protein
68
RNA binding protein
59
narrow histone mark
41
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
68
November, 2018
63
December, 2017
54
August, 2017
40
May, 2022
31
August, 2021
28
December, 2018
23
January, 2019
6
October, 2019
5
July, 2019
3
February, 2021
3
March, 2020
1
February, 2020
1
January, 2018
Available data
726
bam
663
bigWig
525
fastq
489
bed narrowPeak
410
bigBed narrowPeak
166
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
835
Homo sapiens
Biosample type
462
cell line
358
tissue
primary cell
15
in vitro differentiated cells
Organ
774
liver
643
connective tissue
598
pancreas
487
adipose tissue
379
heart
317
kidney
261
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
81
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
835
AMP
Genome assembly (visualization)
664
hg19
571
GRCh38
Lab
764
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
28
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
small RNA-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
835 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
GM12878
60
1
tissue
liver
145
167
20
3
2
1
1
1
1
right lobe of liver
10
3
1
1
2
in vitro differentiated cells
hepatocyte
15
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