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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
Assay category
65
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
23
November, 2017
19
August, 2017
13
December, 2017
5
November, 2018
3
October, 2019
2
August, 2021
Available data
53
bigWig
52
bam
52
bed narrowPeak
48
fastq
44
bigBed narrowPeak
18
tagAlign
12
bed broadPeak
12
bigBed broadPeak
1
bed bed3+
Organism
65
Homo sapiens
Biosample type
29
cell line
27
tissue
8
in vitro differentiated cells
1
primary cell
Organ
78
pancreas
70
brain
65
liver
57
heart
46
connective tissue
45
blood vessel
45
epithelium
45
vasculature
34
limb
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
10
blood
10
bodily fluid
9
vein
4
embryo
4
spleen
Project
65
AMP
Genome assembly (visualization)
53
hg19
49
GRCh38
Lab
64
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
8
inconsistent control run_type
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
65 results
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Clear Filters
ChIP-seq
cell line
HepG2
29
tissue
liver
24
right lobe of liver
3
in vitro differentiated cells
hepatocyte
8
primary cell
hepatocyte
1
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