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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
Assay category
126
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
33
August, 2017
30
November, 2017
27
May, 2020
20
December, 2017
6
August, 2021
5
November, 2018
5
October, 2019
Available data
106
bigWig
104
bed narrowPeak
103
bam
68
fastq
58
bigBed narrowPeak
58
tagAlign
18
bed broadPeak
18
bigBed broadPeak
3
bed bed3+
Organism
126
Homo sapiens
Biosample type
72
tissue
38
cell line
13
in vitro differentiated cells
3
primary cell
Organ
187
brain
151
pancreas
126
liver
97
heart
94
epithelium
80
connective tissue
71
vasculature
70
blood vessel
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
11
blood
11
bodily fluid
6
spleen
4
gonad
4
ovary
3
eye
1
lymph node
1
pituitary gland
Project
126
AMP
Genome assembly (visualization)
106
hg19
91
GRCh38
Lab
123
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
2
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
tissue
liver
67
right lobe of liver
5
cell line
HepG2
38
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
3
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