Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
23
DNA accessibility
4
3D chromatin structure
Date released
20
May, 2022
1
August, 2017
1
August, 2021
1
December, 2018
1
February, 2021
1
July, 2019
1
March, 2020
1
October, 2019
Available data
23
bed narrowPeak
22
bigWig
3
bam
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3
1
bed bed3+
1
bigBed narrowPeak
1
hdf5
Organism
27
Homo sapiens
Biosample type
22
tissue
3
cell line
2
primary cell
Organ
161
pancreas
111
epithelium
76
kidney
51
blood vessel
51
vasculature
50
heart
45
artery
28
eye
27
liver
26
connective tissue
12
bone element
12
limb
12
skeleton
7
brain
7
musculature of body
6
adipose tissue
2
vein
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
27
AMP
Genome assembly (visualization)
26
hg19
3
GRCh38
Lab
20
Karen Mohlke, UNC
6
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
27 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
tissue
liver
20
1
right lobe of liver
1
cell line
HepG2
1
2
primary cell
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
Download