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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
189
Transcription
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
63
December, 2017
49
November, 2018
48
August, 2017
31
August, 2021
20
May, 2022
6
October, 2019
5
December, 2019
5
January, 2019
4
July, 2019
1
February, 2020
1
March, 2020
Available data
669
bam
591
bigWig
457
fastq
413
bed narrowPeak
352
bigBed narrowPeak
169
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
741
Homo sapiens
Biosample type
392
cell line
325
tissue
15
in vitro differentiated cells
9
primary cell
Organ
741
liver
627
connective tissue
621
pancreas
471
adipose tissue
260
epithelium
235
brain
166
heart
163
vasculature
160
blood vessel
112
kidney
90
artery
73
limb
62
bone element
60
blood
60
bodily fluid
45
musculature of body
40
nerve
36
embryo
24
eye
20
spleen
17
vein
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
Project
741
AMP
Genome assembly (visualization)
588
hg19
519
GRCh38
Lab
694
AMP-T2D consortium
27
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
741 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
378
14
tissue
liver
145
167
right lobe of liver
10
3
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
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