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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
30
total RNA-seq
4
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
119
DNA binding
31
Transcription
4
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
94
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
13
December, 2017
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
1
November, 2018
Available data
91
bam
70
fastq
44
tagAlign
12
tsv
1
csv
1
vcf
Organism
161
Homo sapiens
Biosample type
93
tissue
66
cell line
1
in vitro differentiated cells
1
primary cell
Organ
272
pancreas
197
epithelium
161
liver
143
kidney
121
heart
92
connective tissue
89
bone element
63
adipose tissue
58
brain
34
blood vessel
34
vasculature
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
hg19
GRCh38
Lab
125
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
GRCh38
hg19
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
9
2
1
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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