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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
160
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
33
histone
33
histone modification
20
transcription factor
19
narrow histone mark
14
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
66
November, 2017
40
May, 2022
35
August, 2017
32
August, 2021
32
May, 2020
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
228
Homo sapiens
Biosample type
123
tissue
101
cell line
3
primary cell
1
in vitro differentiated cells
Organ
309
pancreas
229
epithelium
228
liver
148
kidney
127
heart
115
connective tissue
93
bone element
68
brain
66
adipose tissue
55
eye
44
vasculature
42
blood vessel
42
musculature of body
25
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
228
AMP
Genome assembly (visualization)
271
hg19
GRCh38
Lab
157
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assembly!
GRCh38
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
70
20
20
1
3
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
85
9
2
2
2
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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