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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
137
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
79
control
52
transcription factor
7
RNA binding protein
6
histone
6
histone modification
4
narrow histone mark
2
broad histone mark
2
chromatin remodeller
1
recombinant protein
Date released
95
November, 2017
40
May, 2022
31
August, 2021
15
August, 2017
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
205
Homo sapiens
Biosample type
130
cell line
72
tissue
2
primary cell
1
in vitro differentiated cells
Organ
300
pancreas
228
epithelium
205
liver
149
kidney
125
heart
96
connective tissue
93
bone element
59
adipose tissue
55
eye
43
vasculature
41
blood vessel
33
brain
28
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
205
AMP
Genome assembly (visualization)
583
hg19
GRCh38
Lab
134
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
205 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
114
9
2
2
2
1
tissue
liver
19
20
20
1
3
1
1
1
right lobe of liver
3
1
1
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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