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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
128
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
128
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
25
broad histone mark
12
transcription factor
2
RNA binding protein
Date released
193
May, 2020
54
August, 2017
40
May, 2022
21
December, 2017
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
261
bam
238
bigWig
154
tsv
86
bed narrowPeak
70
tagAlign
56
fastq
22
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
334
Homo sapiens
Biosample type
401
cell line
334
tissue
15
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
334
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
334
AMP
Genome assembly (visualization)
241
hg19
211
GRCh38
Lab
294
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
inconsistent control
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
334 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
118
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
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