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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
147
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
147
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
33
broad histone mark
14
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
40
May, 2022
36
December, 2017
10
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
288
bam
263
bigWig
159
tsv
106
bed narrowPeak
74
tagAlign
71
fastq
38
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
363
Homo sapiens
Biosample type
cell line
334
tissue
15
in vitro differentiated cells
14
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
363
liver
335
kidney
287
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
363
AMP
Genome assembly (visualization)
268
hg19
236
GRCh38
Lab
323
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent control
biosample_type!
cell line
BIOSAMPLE
ASSAY
363 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
118
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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