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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
393
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
299
transcription factor
82
recombinant protein
61
control
56
RNA binding protein
30
histone
30
histone modification
21
chromatin remodeller
16
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
31
August, 2021
15
December, 2017
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
382
fastq
381
bam
346
bigWig
322
bed narrowPeak
307
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
416
Homo sapiens
Biosample type
401
cell line
361
tissue
15
in vitro differentiated cells
14
primary cell
Organ
416
liver
103
epithelium
97
connective tissue
95
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
61
blood
61
bodily fluid
37
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
416
AMP
Genome assembly (visualization)
344
hg19
282
GRCh38
Lab
385
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
416 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
2
2
2
1
1
1
in vitro differentiated cells
hepatocyte
15
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