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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
364
ChIP-seq
187
total RNA-seq
31
DNase-seq
25
ATAC-seq
7
small RNA-seq
4
WGBS
3
pCHi-C
2
RRBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
364
DNA binding
195
Transcription
57
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
254
histone modification
253
histone
158
narrow histone mark
95
broad histone mark
71
control
39
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
92
October, 2019
82
November, 2017
54
August, 2017
48
December, 2017
40
May, 2022
28
May, 2019
25
June, 2019
19
July, 2019
16
October, 2017
13
February, 2020
9
November, 2018
5
March, 2020
1
February, 2021
1
February, 2023
Available data
514
bam
467
bigWig
305
bed narrowPeak
188
tagAlign
177
tsv
165
bigBed narrowPeak
95
fastq
39
bed broadPeak
33
bed bed3+
30
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
1
tagAlign bed3+
Organism
626
Homo sapiens
Biosample type
626
tissue
401
cell line
35
primary cell
15
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
626
AMP
Genome assembly (visualization)
441
GRCh38
411
hg19
Lab
586
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
626 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
pCHi-C
RRBS
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
liver
145
167
2
20
1
3
1
1
1
1
brain
20
1
14
1
1
layer of hippocampus
23
right lobe of liver
10
3
2
1
2
1
caudate nucleus
15
1
1
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