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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
22
DNase-seq
21
ATAC-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
43
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
18
June, 2019
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
306
bam
283
bigWig
154
tsv
131
bed narrowPeak
83
fastq
70
tagAlign
67
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
379
Homo sapiens
Biosample type
401
cell line
379
tissue
15
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
379
AMP
Genome assembly (visualization)
286
hg19
256
GRCh38
Lab
339
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
379 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
2
20
3
1
1
1
1
1
right lobe of liver
3
10
2
1
1
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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