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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
25
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
53
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
bigBed bedMethyl
1
csv
1
hic
Organism
360
Homo sapiens
Biosample type
400
cell line
360
tissue
15
in vitro differentiated cells
13
primary cell
Organ
545
connective tissue
499
pancreas
486
adipose tissue
360
liver
298
kidney
266
heart
264
brain
158
bone element
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
360
AMP
Genome assembly (visualization)
267
hg19
238
GRCh38
Lab
320
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
360 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
right lobe of liver
3
10
1
2
1
2
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