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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
545
DNA binding
188
Transcription
23
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
106
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
669
bam
611
bigWig
465
fastq
435
bed narrowPeak
356
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
770
Homo sapiens
Biosample type
400
cell line
355
tissue
15
in vitro differentiated cells
primary cell
Organ
770
liver
626
connective tissue
571
pancreas
483
adipose tissue
353
heart
250
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
49
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
770
AMP
Genome assembly (visualization)
605
hg19
514
GRCh38
Lab
699
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
hdf5
biosample_type!
primary cell
BIOSAMPLE
ASSAY
770 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
STARR-seq
pCHi-C
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
1
1
tissue
liver
142
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
in vitro differentiated cells
hepatocyte
15
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