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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
441
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
441
DNA binding
162
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
324
transcription factor
82
recombinant protein
75
control
57
RNA binding protein
39
histone modification
38
histone
23
chromatin remodeller
22
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
302
November, 2017
143
May, 2020
63
December, 2017
50
November, 2018
23
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
607
Homo sapiens
Biosample type
354
cell line
232
tissue
15
in vitro differentiated cells
6
primary cell
Organ
651
pancreas
607
liver
573
connective tissue
436
adipose tissue
294
epithelium
175
heart
168
vasculature
165
blood vessel
111
brain
92
artery
78
limb
66
bone element
66
kidney
60
blood
60
bodily fluid
40
nerve
33
embryo
24
musculature of body
23
spleen
18
vein
8
skeleton
3
eye
1
pericardium
Project
607
AMP
Genome assembly (visualization)
535
hg19
492
GRCh38
Lab
607
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
tagAlign
BIOSAMPLE
ASSAY
607 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
347
5
1
1
tissue
liver
69
147
1
right lobe of liver
10
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
Liver fetal (hepatocyte)
1
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