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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
23
ATAC-seq
Assay category
408
DNA binding
23
DNA accessibility
Target of assay
327
transcription factor
81
recombinant protein
78
histone modification
77
histone
56
RNA binding protein
49
narrow histone mark
28
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
50
December, 2017
48
November, 2018
27
May, 2020
20
May, 2022
16
August, 2017
14
August, 2021
6
October, 2019
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
431
Homo sapiens
Biosample type
308
cell line
108
tissue
14
in vitro differentiated cells
1
primary cell
Organ
431
liver
197
pancreas
171
brain
161
heart
132
epithelium
122
vasculature
120
blood vessel
105
kidney
70
artery
61
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
27
musculature of body
25
nerve
13
spleen
12
embryo
11
adipose tissue
11
vein
8
bone element
8
skeleton
1
pituitary gland
Project
431
AMP
Genome assembly (visualization)
427
hg19
357
GRCh38
Lab
397
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
bigBed bedMethyl
BIOSAMPLE
ASSAY
431 results
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ChIP-seq
ATAC-seq
cell line
HepG2
307
1
tissue
liver
80
20
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
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