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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
ChIP-seq
23
ATAC-seq
Assay category
372
DNA binding
23
DNA accessibility
Target of assay
327
transcription factor
81
recombinant protein
56
RNA binding protein
42
histone modification
41
histone
23
broad histone mark
23
chromatin remodeller
18
narrow histone mark
2
other context
2
other post-translational modification
Date released
240
November, 2017
50
December, 2017
48
November, 2018
20
May, 2022
16
August, 2017
14
August, 2021
6
October, 2019
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
395
Homo sapiens
Biosample type
299
cell line
81
tissue
14
in vitro differentiated cells
1
primary cell
Organ
395
liver
183
pancreas
157
heart
130
epithelium
118
vasculature
116
blood vessel
105
kidney
88
brain
66
artery
60
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
25
nerve
14
musculature of body
13
spleen
12
embryo
11
vein
10
adipose tissue
8
bone element
8
skeleton
Project
395
AMP
Genome assembly (visualization)
391
hg19
329
GRCh38
Lab
361
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
tagAlign
BIOSAMPLE
ASSAY
395 results
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ChIP-seq
ATAC-seq
cell line
HepG2
298
1
tissue
liver
53
20
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
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