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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
528
ChIP-seq
160
total RNA-seq
5
WGBS
3
ATAC-seq
3
small RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
Assay category
528
DNA binding
164
Transcription
7
DNA methylation
4
DNA accessibility
2
3D chromatin structure
Target of assay
325
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
August, 2021
1
December, 2018
1
February, 2020
Available data
681
bam
588
bigWig
465
fastq
407
bed narrowPeak
358
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
707
Homo sapiens
Biosample type
369
cell line
315
tissue
15
in vitro differentiated cells
8
primary cell
Organ
707
liver
696
pancreas
654
connective tissue
485
adipose tissue
345
epithelium
323
heart
251
brain
223
vasculature
219
blood vessel
158
bone element
137
artery
86
limb
85
kidney
62
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
34
embryo
24
spleen
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
707
AMP
Genome assembly (visualization)
577
hg19
520
GRCh38
Lab
707
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
707 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
DNase-seq
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
1
tissue
liver
142
147
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
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