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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
Assay category
336
DNA binding
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
241
November, 2017
49
November, 2018
33
December, 2017
11
August, 2021
2
August, 2017
Available data
333
bigWig
329
bed narrowPeak
327
fastq
326
bam
314
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
3
tar
bed bed3+
Organism
336
Homo sapiens
Biosample type
297
cell line
37
tissue
2
in vitro differentiated cells
Organ
336
liver
51
blood
51
bodily fluid
30
connective tissue
17
heart
13
adipose tissue
12
pancreas
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
336
AMP
Genome assembly (visualization)
327
hg19
284
GRCh38
Lab
325
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
lung
BIOSAMPLE
ASSAY
336 results
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Clear Filters
ChIP-seq
cell line
HepG2
297
tissue
liver
35
right lobe of liver
2
in vitro differentiated cells
hepatocyte
2
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