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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
354
ChIP-seq
159
total RNA-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
354
DNA binding
162
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
284
transcription factor
81
recombinant protein
67
histone modification
66
histone
51
RNA binding protein
39
narrow histone mark
27
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
217
November, 2017
162
May, 2020
50
December, 2017
49
November, 2018
16
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
1
February, 2021
1
March, 2020
Available data
531
bam
528
bigWig
367
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
520
Homo sapiens
Biosample type
268
cell line
232
tissue
14
in vitro differentiated cells
6
primary cell
Organ
606
pancreas
547
connective tissue
520
liver
418
adipose tissue
275
epithelium
236
heart
185
brain
180
vasculature
178
blood vessel
127
kidney
124
artery
66
bone element
60
limb
54
blood
54
bodily fluid
29
nerve
26
embryo
20
musculature of body
15
spleen
10
vein
8
skeleton
2
eye
1
pericardium
1
pituitary gland
0
stomach
Project
520
AMP
Genome assembly (visualization)
612
hg19
520
GRCh38
Lab
520
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
520 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
261
5
1
1
tissue
liver
72
147
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
Liver fetal (hepatocyte)
1
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