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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
546
ChIP-seq
185
total RNA-seq
23
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
546
DNA binding
186
Transcription
24
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
32
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
674
bam
614
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
168
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
770
Homo sapiens
Biosample type
400
cell line
348
tissue
15
in vitro differentiated cells
7
primary cell
Organ
911
pancreas
769
liver
640
connective tissue
492
epithelium
473
adipose tissue
338
heart
265
kidney
236
brain
213
vasculature
210
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
52
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
770
AMP
Genome assembly (visualization)
604
hg19
513
GRCh38
Lab
699
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
July, 2019
BIOSAMPLE
ASSAY
770 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
1
2
1
tissue
liver
142
165
20
3
1
1
1
1
right lobe of liver
10
1
1
1
gastric (mucosa of stomach)
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
5
Liver fetal (hepatocyte)
1
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