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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
Assay category
116
DNA binding
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
41
November, 2017
27
May, 2020
19
November, 2018
13
August, 2017
11
December, 2017
3
August, 2021
2
October, 2019
Available data
108
bigWig
107
bam
107
bed narrowPeak
76
fastq
69
bigBed narrowPeak
40
tagAlign
10
bed broadPeak
10
bigBed broadPeak
bed bed3+
1
tar
Organism
116
Homo sapiens
Biosample type
63
cell line
46
tissue
7
in vitro differentiated cells
Organ
120
brain
116
liver
74
pancreas
55
epithelium
51
heart
43
connective tissue
31
vasculature
29
blood vessel
18
kidney
17
adipose tissue
15
limb
13
musculature of body
11
blood
11
bodily fluid
8
nerve
7
artery
7
embryo
6
vein
4
eye
4
gonad
4
ovary
2
spleen
1
lymph node
1
pituitary gland
Project
116
AMP
Genome assembly (visualization)
105
hg19
90
GRCh38
Lab
113
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
3
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
cell line
HepG2
63
tissue
liver
43
right lobe of liver
3
in vitro differentiated cells
hepatocyte
7
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