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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
Assay category
207
DNA binding
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
71
November, 2017
50
May, 2020
43
August, 2017
30
December, 2017
8
August, 2021
5
October, 2019
Available data
181
bam
122
fastq
96
bigWig
86
tagAlign
81
bed narrowPeak
35
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
bed bed3+
Organism
207
Homo sapiens
Biosample type
115
tissue
78
cell line
13
in vitro differentiated cells
1
primary cell
Organ
218
brain
207
liver
190
pancreas
120
epithelium
117
heart
112
connective tissue
93
vasculature
91
blood vessel
66
limb
56
adipose tissue
42
kidney
39
musculature of body
35
nerve
29
artery
17
vein
16
embryo
14
spleen
7
blood
7
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
207
AMP
Genome assembly (visualization)
93
hg19
67
GRCh38
Lab
200
AMP-T2D consortium
7
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
207 results
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Clear Filters
ChIP-seq
tissue
liver
107
right lobe of liver
8
cell line
HepG2
78
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
1
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