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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
5
total RNA-seq
3
DNase-seq
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
452
DNA binding
5
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
52
November, 2018
27
August, 2017
5
January, 2019
1
December, 2018
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
463
Homo sapiens
Biosample type
366
cell line
82
tissue
15
in vitro differentiated cells
Organ
467
pancreas
463
liver
257
epithelium
99
connective tissue
60
blood
60
bodily fluid
42
adipose tissue
27
embryo
22
spleen
21
brain
6
vasculature
3
blood vessel
Project
463
AMP
Genome assembly (visualization)
389
hg19
342
GRCh38
Lab
463
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
463 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG2
360
5
1
tissue
liver
67
2
1
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
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