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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
23
ATAC-seq
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
23
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
9
July, 2019
5
December, 2019
5
January, 2019
4
August, 2017
3
February, 2021
3
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
Available data
185
bigWig
174
tsv
166
bam
23
bed narrowPeak
10
fastq
3
bed bedMethyl
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bigBed narrowPeak
1
csv
1
hdf5
1
vcf
Organism
230
Homo sapiens
Biosample type
201
tissue
22
cell line
7
primary cell
Organ
714
pancreas
519
connective tissue
414
adipose tissue
370
epithelium
230
liver
221
heart
217
kidney
159
bone element
121
blood vessel
121
vasculature
103
artery
51
eye
34
brain
20
lung
20
musculature of body
19
limb
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
3
vein
2
intestine
2
spleen
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
230
AMP
Genome assembly (visualization)
189
hg19
165
GRCh38
Lab
177
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigBed bedMethyl
assay_title!
ChIP-seq
DNase-seq
BIOSAMPLE
ASSAY
230 results
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total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
1
3
1
1
1
right lobe of liver
3
1
1
2
cell line
HepG2
14
1
2
2
2
1
primary cell
hepatocyte
5
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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