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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
1
pCHi-C
Assay category
417
DNA binding
162
Transcription
28
DNA accessibility
3
3D chromatin structure
Target of assay
318
transcription factor
82
histone modification
81
histone
78
recombinant protein
53
RNA binding protein
51
narrow histone mark
30
broad histone mark
17
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
256
November, 2017
170
May, 2020
50
December, 2017
47
November, 2018
20
May, 2022
19
August, 2017
18
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
605
bigWig
573
bam
425
bed narrowPeak
378
fastq
342
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
611
Homo sapiens
Biosample type
318
cell line
267
tissue
14
in vitro differentiated cells
12
primary cell
Organ
611
liver
602
pancreas
571
connective tissue
414
adipose tissue
284
epithelium
186
heart
164
vasculature
159
blood vessel
159
brain
125
kidney
96
limb
93
artery
70
bone element
70
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
1
pericardium
1
pituitary gland
Project
611
AMP
Genome assembly (visualization)
611
hg19
525
GRCh38
Lab
576
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent control run_type
files.file_type!
bigBed bedMethyl
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
611 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
pCHi-C
cell line
HepG2
310
5
1
1
1
tissue
liver
83
147
20
2
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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