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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
486
ChIP-seq
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
486
DNA binding
193
Transcription
24
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
286
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
narrow histone mark
51
RNA binding protein
34
broad histone mark
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
253
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
45
November, 2018
40
May, 2022
35
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
673
bam
614
bigWig
457
fastq
433
bed narrowPeak
350
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
717
Homo sapiens
Biosample type
357
tissue
334
cell line
15
in vitro differentiated cells
11
primary cell
Organ
919
pancreas
717
liver
671
connective tissue
496
epithelium
486
adipose tissue
355
heart
272
kidney
237
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
56
eye
46
musculature of body
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
717
AMP
Genome assembly (visualization)
552
hg19
475
GRCh38
Lab
646
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
inconsistent control run_type
files.file_type!
bigBed bedMethyl
bed broadPeak
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
717 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
1
3
1
1
1
right lobe of liver
10
3
1
1
2
1
cell line
HepG2
312
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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