Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
180
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
1
single cell RNA-seq
Assay category
534
DNA binding
184
Transcription
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
49
November, 2018
20
May, 2022
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
673
bam
582
bigWig
461
fastq
399
bed narrowPeak
352
bigBed narrowPeak
165
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
728
Homo sapiens
Biosample type
368
cell line
335
tissue
15
in vitro differentiated cells
10
primary cell
Organ
764
pancreas
728
liver
647
connective tissue
481
adipose tissue
395
epithelium
308
heart
247
brain
185
kidney
176
vasculature
173
blood vessel
147
bone element
92
artery
77
limb
60
blood
60
bodily fluid
57
musculature of body
40
nerve
37
embryo
28
eye
21
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
728
AMP
Genome assembly (visualization)
580
hg19
522
GRCh38
Lab
708
AMP-T2D consortium
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
lab.title!
Bing Ren, UCSD
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
728 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
single cell RNA-seq
cell line
HepG2
360
5
1
2
tissue
liver
145
167
3
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
endothelial cell of hepatic sinusoid
1
Download