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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
193
Transcription
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
49
November, 2018
35
August, 2021
20
May, 2022
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
673
bam
596
bigWig
461
fastq
413
bed narrowPeak
352
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
759
Homo sapiens
Biosample type
399
cell line
335
tissue
15
in vitro differentiated cells
10
primary cell
Organ
767
pancreas
759
liver
647
connective tissue
481
adipose tissue
395
epithelium
308
heart
247
brain
187
kidney
176
vasculature
173
blood vessel
bone element
92
artery
77
limb
60
blood
60
bodily fluid
57
musculature of body
40
nerve
37
embryo
28
eye
21
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
759
AMP
Genome assembly (visualization)
595
hg19
522
GRCh38
Lab
708
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
organ_slims!
bone element
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
759 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
2
2
2
1
tissue
liver
145
167
1
3
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
endothelial cell of hepatic sinusoid
1
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