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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
492
DNA binding
193
Transcription
29
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
335
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
279
November, 2017
194
May, 2020
59
December, 2017
53
August, 2017
40
May, 2022
34
August, 2021
33
November, 2018
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
624
bam
566
bigWig
408
fastq
385
bed narrowPeak
303
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
hic
tar
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
728
Homo sapiens
Biosample type
358
tissue
344
cell line
13
in vitro differentiated cells
13
primary cell
Organ
931
pancreas
728
liver
671
connective tissue
509
epithelium
484
adipose tissue
374
heart
347
kidney
281
brain
228
vasculature
224
blood vessel
159
bone element
140
artery
121
limb
92
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
23
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
728
AMP
Genome assembly (visualization)
566
hg19
479
GRCh38
Lab
658
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
files.file_type!
bigBed bedMethyl
tar
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
728 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
144
167
20
2
1
3
1
1
1
right lobe of liver
9
3
1
2
1
2
cell line
HepG2
322
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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