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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
189
total RNA-seq
22
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
194
DNA binding
193
Transcription
23
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
108
control
66
histone modification
65
histone
45
narrow histone mark
20
broad histone mark
20
transcription factor
3
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
60
November, 2017
48
August, 2017
40
May, 2022
35
August, 2021
13
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
427
Homo sapiens
Biosample type
312
tissue
102
cell line
12
primary cell
1
in vitro differentiated cells
Organ
855
pancreas
656
connective tissue
481
adipose tissue
446
epithelium
427
liver
259
heart
250
kidney
159
bone element
159
brain
151
vasculature
149
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
427
AMP
Genome assembly (visualization)
265
hg19
205
GRCh38
Lab
356
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigBed broadPeak
bigBed narrowPeak
BIOSAMPLE
ASSAY
427 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
107
167
20
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
79
14
1
1
2
2
2
1
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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