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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
76
DNA binding
31
Transcription
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
68
control
5
transcription factor
3
histone
3
histone modification
2
RNA binding protein
2
narrow histone mark
1
broad histone mark
1
recombinant protein
Date released
47
November, 2017
20
May, 2022
17
August, 2021
16
August, 2017
13
December, 2017
3
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2018
1
October, 2019
Available data
681
bam
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
125
Homo sapiens
Biosample type
69
cell line
53
tissue
2
primary cell
1
in vitro differentiated cells
Organ
318
pancreas
223
kidney
221
epithelium
167
heart
125
liver
101
bone element
93
connective tissue
79
vasculature
78
blood vessel
59
adipose tissue
55
eye
54
artery
31
limb
28
brain
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
88
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
tagAlign
BIOSAMPLE
ASSAY
125 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
52
9
2
2
1
2
1
tissue
liver
20
20
3
1
1
1
1
right lobe of liver
3
1
1
1
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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