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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
20
total RNA-seq
6
DNase-seq
5
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
29
DNA accessibility
21
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
40
May, 2022
6
August, 2017
4
August, 2021
4
November, 2018
3
February, 2021
3
July, 2019
2
June, 2019
1
December, 2018
1
March, 2020
1
October, 2019
Available data
190
bigWig
tsv
171
bam
28
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
65
Homo sapiens
Biosample type
52
tissue
8
cell line
5
primary cell
Organ
311
pancreas
278
kidney
239
epithelium
101
bone element
91
heart
66
vasculature
65
liver
63
blood vessel
53
connective tissue
51
eye
49
artery
49
limb
48
musculature of body
42
brain
19
lung
18
ureter
17
adipose tissue
16
skeleton
9
blood
9
bodily fluid
5
vein
4
spleen
3
nerve
1
bone marrow
1
embryo
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
65
AMP
Genome assembly (visualization)
34
hg19
9
GRCh38
Lab
40
Karen Mohlke, UNC
21
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
tsv
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
65 results
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ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
20
2
3
1
1
1
right lobe of liver
1
2
1
cell line
HepG2
1
1
2
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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