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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
23
ATAC-seq
20
total RNA-seq
6
DNase-seq
5
WGBS
Hi-C
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
29
DNA accessibility
21
Transcription
7
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
50
May, 2020
40
May, 2022
25
August, 2021
6
October, 2019
3
February, 2021
2
July, 2019
2
June, 2019
Available data
681
bam
621
bigWig
464
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
csv
1
vcf
Organism
613
Homo sapiens
Biosample type
384
cell line
206
tissue
15
in vitro differentiated cells
8
primary cell
Organ
613
liver
520
pancreas
360
epithelium
329
kidney
257
brain
205
connective tissue
182
heart
163
vasculature
157
blood vessel
111
limb
101
bone element
90
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
613
AMP
Genome assembly (visualization)
460
hg19
369
GRCh38
Lab
552
AMP-T2D consortium
40
Karen Mohlke, UNC
21
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
assay_title!
Hi-C
BIOSAMPLE
ASSAY
613 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
1
1
tissue
liver
145
20
20
2
3
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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