Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
546
ChIP-seq
23
ATAC-seq
20
total RNA-seq
5
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
546
DNA binding
24
DNA accessibility
21
Transcription
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
51
August, 2017
50
May, 2020
50
November, 2018
40
May, 2022
23
August, 2021
6
October, 2019
2
February, 2021
2
July, 2019
1
December, 2018
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
604
Homo sapiens
Biosample type
385
cell line
201
tissue
15
in vitro differentiated cells
3
primary cell
Organ
604
liver
500
pancreas
347
epithelium
252
kidney
225
brain
179
connective tissue
155
heart
155
vasculature
151
blood vessel
101
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
52
eye
36
nerve
23
spleen
20
embryo
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
604
AMP
Genome assembly (visualization)
450
hg19
358
GRCh38
Lab
542
AMP-T2D consortium
40
Karen Mohlke, UNC
22
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
bed bed3+
BIOSAMPLE
ASSAY
604 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
1
tissue
liver
142
20
20
3
1
1
1
right lobe of liver
10
1
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
Download