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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
525
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
Assay category
525
DNA binding
Target of assay
311
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
50
May, 2020
49
November, 2018
48
August, 2017
36
December, 2017
22
August, 2021
5
October, 2019
Available data
483
bam
425
fastq
405
bigWig
386
bed narrowPeak
325
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
525
Homo sapiens
Biosample type
378
cell line
128
tissue
15
in vitro differentiated cells
4
primary cell
Organ
525
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
59
blood
59
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
525
AMP
Genome assembly (visualization)
402
hg19
333
GRCh38
Lab
507
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
vcf
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
525 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
118
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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