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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
452
DNA binding
Target of assay
327
transcription factor
82
recombinant protein
77
control
57
RNA binding protein
45
histone modification
44
histone
25
broad histone mark
23
chromatin remodeller
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
49
November, 2018
25
August, 2017
Available data
510
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
452
Homo sapiens
Biosample type
360
cell line
77
tissue
15
in vitro differentiated cells
Organ
452
liver
147
pancreas
90
connective tissue
72
epithelium
60
blood
60
bodily fluid
37
adipose tissue
22
embryo
20
spleen
18
brain
6
vasculature
3
blood vessel
Project
452
AMP
Genome assembly (visualization)
380
hg19
333
GRCh38
Lab
452
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
vcf
BIOSAMPLE
ASSAY
452 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
tissue
liver
67
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
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