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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
569
ChIP-seq
189
total RNA-seq
23
ATAC-seq
8
DNase-seq
6
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
569
DNA binding
193
Transcription
32
DNA accessibility
6
3D chromatin structure
4
DNA methylation
Target of assay
338
transcription factor
118
histone modification
117
histone
110
control
82
recombinant protein
66
narrow histone mark
58
RNA binding protein
51
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
52
November, 2018
40
May, 2022
34
August, 2021
28
October, 2019
9
July, 2019
5
December, 2019
5
January, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
701
bam
637
bigWig
465
fastq
454
bed narrowPeak
371
bigBed narrowPeak
174
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
15
bed bed3+
4
hic
4
tar
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
vcf
Organism
809
Homo sapiens
Biosample type
399
cell line
360
tissue
35
primary cell
15
in vitro differentiated cells
Organ
940
pancreas
787
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
809
AMP
Genome assembly (visualization)
640
hg19
542
GRCh38
Lab
739
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
vcf
bed bedMethyl
BIOSAMPLE
ASSAY
809 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
378
14
1
2
2
2
tissue
liver
145
167
20
2
1
3
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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