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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ChIP-seq
189
total RNA-seq
23
ATAC-seq
8
DNase-seq
6
Hi-C
5
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
452
DNA binding
193
Transcription
32
DNA accessibility
7
DNA methylation
6
3D chromatin structure
Target of assay
338
transcription factor
118
histone modification
histone
110
control
82
recombinant protein
66
narrow histone mark
58
RNA binding protein
51
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
53
November, 2018
46
December, 2017
40
May, 2022
28
August, 2021
22
August, 2017
10
July, 2019
8
October, 2019
5
December, 2019
5
January, 2019
4
March, 2020
3
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
607
bam
543
bigWig
421
fastq
364
bed narrowPeak
326
bigBed narrowPeak
174
tsv
51
bed broadPeak
51
bigBed broadPeak
28
tagAlign
12
bed bed3+
4
hic
4
tar
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
vcf
Organism
695
Homo sapiens
Biosample type
382
cell line
292
tissue
18
primary cell
3
in vitro differentiated cells
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
695
AMP
Genome assembly (visualization)
548
hg19
464
GRCh38
Lab
628
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
audit script error
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
vcf
target.investigated_as!
histone
BIOSAMPLE
ASSAY
695 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
360
14
1
2
1
2
2
tissue
liver
81
167
20
2
1
3
1
1
1
1
right lobe of liver
5
3
1
2
1
2
primary cell
hepatocyte
1
5
1
1
endothelial cell of umbilical vein
2
2
2
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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