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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
Assay category
73
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
43
November, 2017
23
November, 2018
6
December, 2017
1
August, 2021
Available data
72
bam
72
fastq
71
bed narrowPeak
71
bigWig
70
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
1
tar
Organism
73
Homo sapiens
Biosample type
67
cell line
4
tissue
2
in vitro differentiated cells
Organ
73
liver
15
blood
15
bodily fluid
12
connective tissue
11
heart
9
pancreas
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
73
AMP
Genome assembly (visualization)
70
hg19
65
GRCh38
Lab
72
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
files.file_type!
vcf
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
cell line
HepG2
67
tissue
liver
3
right lobe of liver
1
in vitro differentiated cells
hepatocyte
2
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